A native DeepSeek Harness plugin that turns DSH into a Claude Science–style research workbench for the life sciences: a ReAct research loop, provenance-tracked versioned artifacts, and SSH / HPC remote compute.
DSH integration
Native runtime
Author-claimed
Safety audit
Unaudited
Last verified
2026-09-05
License
MIT
01What can it help you accomplish?
Run a ReAct research loop for genomics / pathogens / human health / bioinformatics inside DeepSeek Harness
A `research-manifest.json` state machine tracing Question → Hypothesis → Experiment → Observe → Analyze → Conclude → Next Question
Bioinformatics and life-science researchers running DeepSeek Harness who want a structured, reproducible research loop
Save every result as a versioned, provenance-tracked artifact
Results under `artifacts/<name>/v<N>/` with per-file SHA-256, an `artifact.json` provenance record and an append-only `provenance.md`
Researchers who need auditable, reproducible science outputs with command / inputs / environment captured
Dispatch compute to SSH / HPC clusters from a DeepSeek Harness session
16 `remote_*` tools (remote_host_add, remote_host_probe, remote_host_notes, remote_run, remote_status, remote_logs, …) for remote execution
Computational biologists who need to run jobs on remote clusters without leaving the DSH research loop
02How to install into DeepSeek Harness
Not specified by the author
03DSH integration and capability boundaries
Native dsh-plugin for DeepSeek Harness — a Claude Science–style research workbench providing a ReAct research-loop engine, versioned artifacts with provenance, and an SSH / HPC remote-compute engine.
ReAct research-loop engine
research questions for genomics / pathogens / human health / bioinformatics→eight research_* tools driving a research-manifest.json state machine
Versioned artifacts with provenance
any research result→artifacts/<name>/v<N>/ with per-file SHA-256, artifact.json provenance and append-only provenance.md
Remote compute engine (SSH / HPC clusters)
compute jobs to run on remote hosts / clusters→16 remote_* tools for SSH / HPC cluster execution
connects to external SSH / HPC hosts you configure
04Who is it for? When not to use it?
Good for
- Bioinformatics and life-science researchers running DeepSeek Harness who want a structured, reproducible research loop
- Researchers who need auditable, reproducible science outputs with command / inputs / environment captured
- Computational biologists who need to run jobs on remote clusters without leaving the DSH research loop
05Compatibility, maintenance and safety notes
- The remote compute engine targets SSH / HPC clusters, so it requires SSH or HPC cluster access you supply; it is not a local-only feature.
- Requires Node.js >= 18 (the README's node badge declares node>=18).
MIT · actively maintained (latest release v0.2.0, 2026-08-18)
06Frequently asked questions
What is dsh-science and how does it integrate with DeepSeek Harness?
dsh-science is a Claude Science–style research workbench built as a dsh-plugin for DeepSeek Harness, covering genomics / pathogens / human health / bioinformatics. It provides a ReAct research-loop engine, versioned artifacts with provenance, an SSH / HPC remote-compute engine, and 11 science skills.
What tools make up the ReAct research loop?
Eight research_* tools — research_init, research_state, research_hypothesis, research_experiment, research_findings, research_phase, research_review, research_report — persisted in a research-manifest.json state machine (Question → Hypothesis → Experiment → Observe → Analyze → Conclude → Next Question).
How does artifact provenance work?
Every result is saved as artifacts/<name>/v<N>/ with per-file SHA-256, an artifact.json provenance record (command / inputs / environment / envFile) and an append-only provenance.md, via artifact_save / artifact_list / artifact_show / artifact_diff / artifact_verify / artifact_deprecate / artifact_reproduce.
Can it run compute on remote clusters?
Yes — the remote compute engine provides 16 remote_* tools (remote_host_add, remote_host_probe, remote_host_notes, remote_run, remote_status, remote_logs, …) for SSH / HPC cluster execution. It requires SSH or HPC cluster access you supply.
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08Data and sources
for [DeepSeek Harness](https://github.com/deepseek-ai/deepseek-harness) — for genomics / pathogens / human health / bioi…
Claude Science-style research workbench for DSH: ReAct research-loop engine (research_* tools)
This page is generated from the project’s public documentation, repository metadata and a structured parse of DSH Plugins; last verified on 2026-09-05. Found an error? Submit a correction.
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